If Itachi didn't kill Shisui, how did he really awaken his Mangekyou Sharingan?
2 Answers
The Mangekyou Sharingan is activated once its user experiences great loss, especially of someone close to him.
This means that Itachi did not have to kill Shisui in order for the Mangekyou to activate. What is most important for the activation is that the user feels the loss, which causes their brain to release a special kind of chakra that affects their optic nerves (chapter 619), thus awakening the Sharingan, and the Mangekyou, depending on what 'level' you were before, and on how much loss you have experienced. The more loss you experience, the more powerful the Sharingan gets.
Probably, just witnessing Shisui's death to protect the village was traumatic enough for Itachi to awaken his Mangekyou.
Also, if you remember, Sasuke's Mangekyou activated when Itachi died. He did not kill him either, but witnessing his death, even though he hated him, was traumatic enough to activate it.
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1He kinda did kill Itachi, but the eyes awakened only after he learned the truth about him. Mar 21, 2013 at 15:14
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7@MadaraUchiha: C'mon... He didn't kill him. He wouldn't be able to, even if he had wanted to. Itachi died only because he was both sick and not going hard on Sasuke.– JNat ♦Mar 21, 2013 at 16:16
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Isn't that the same way Madara Uchiha awakened his Mangekyou? If you see in Chapter 625, you can see that his Mangekyou is awakened. I feel that it is because of the loss of his brother, who is Hashirama in the scenario.– AniketApr 15, 2013 at 13:20
That may be true, but that's not how Sasuke got his Mangekyou Sharingan. In the episodes following the fight, we learn that Itachi implanted his Mangekyou powers (Amaterasu, etc.) into Sasuke. Those powers activated when Sasuke looked at Madara's Sharingan; as Madara explained, Itachi made the abilities self-activate when they came into contact with Madara's Sharingan. This was because Itachi did not want Madara and Sasuke to meet, in order to prevent Madara from telling Sasuke the truth about Itachi.